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25 Healthy Muffin Recipes – Eating Bird Food


If you’re looking for a new muffin recipe you’re in luck because I’m sharing over 25 healthy muffin recipes. They’re all delicious, made with wholesome ingredients, great for meal prep and perfect for breakfast and snacks.

If you’re looking for a new baking recipe, muffins are the way to go! They’re easy to make, portable and perfect for meal prep. And with these healthy muffin recipes they’re ones you can feel good about eating!

With everything from blueberry and lemon poppyseed muffins to chocolate chip and protein muffins all of these recipes are made with wholesome, real-food ingredients like whole wheat flour, almond flour, maple syrup and Greek yogurt. Many of them are also gluten-free, dairy-free with some being vegan.

No matter what your dietary preferences are there’s a muffin recipe for everyone!

Collage of four muffin photos: protein muffins, sweet potato muffins, blueberry yogurt muffins and banana blender muffins.

Healthy Muffin Recipes

I’ve pulled together over 25 healthy muffin recipes that the whole family will love! Enjoy!

A bite taken out of a banana muffin.

Banana Blender Muffins

These healthy banana blender muffins are made with a combo of oat and almond flour and sweetened with maple syrup. They’re gluten-free, dairy-free, moist, easy to make and perfect for breakfast or snacking.

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Protein muffins in paper wrappers on a wire rack.

Protein Muffins

These flourless protein muffins are made with mashed banana, almond butter and protein powder. They come together quickly in a blender and are oil-free, gluten-free, dairy-free and have 11 grams of protein in each muffin.

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A birds eye view of 4 chocolate chip muffins on a wire rack.

Healthy Chocolate Muffins

These healthy chocolate muffins are dairy-free and made with whole wheat flour, applesauce and naturally sweetened with maple syrup. They’re fudgy, rich, perfectly moist and absolutely delicious.

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Three apple yogurt muffins stacked on top of each other. The muffins are wrapped in paper liners.

Apple Yogurt Muffins

These apple yogurt muffins are studded with apples and packed with cinnamon flavor. They’re soft, fluffy and extra moist thanks to the Greek yogurt. Perfect for meal prep!

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Two chocolate chip yogurt muffins stacked on top of each other. The top muffin has a bite taken out of it.

Chocolate Chip Yogurt Muffins

Protein packed chocolate chip yogurt muffins made with Greek yogurt, whole wheat flour, and maple syrup. They’re light, fluffy and perfect for an on-the-go snack or breakfast.

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Sweet potato muffins in and around a muffin tin.

Sweet Potato Muffins

These healthy sweet potato muffins are made with simple, wholesome ingredients and have a delicious cinnamon sugar topping. They’re moist, fluffy and super easy to make! 

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A muffin resting on a plate. The plate is surrounded by other muffins.

Strawberry Yogurt Muffins

These strawberry yogurt muffins are made with Greek yogurt, naturally sweetened with maple syrup and studded with fresh strawberries. They’re super moist and fluffy and absolutely delicious.

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An angled photo of 4 carrot raisin muffins on a plate. One of the muffins is resting on it's side.

Healthy Carrot Raisin Muffins

These healthy carrot raisin muffins are made with almond and coconut flour and studded with fresh carrots and raisins. Perfect for a quick breakfast or afternoon snack. Gluten-free + dairy-free.

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An overhead view of coconut flour muffins arranged on a wire cooling rack. One muffin is turned on its side.

Coconut Flour Muffins

These coconut flour muffins are made with just 8 simple ingredients and come together in no time. They’re soft, perfectly moist and bursting with fresh blueberries! Gluten-free + grain-free.

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Two muffins stacked on top of each other.

Morning Glory Muffins

Packed with fruit, carrots, walnuts and rolled oats, these morning glory muffins are hearty, filling and perfect way to start the day!

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An overhead photo looking at an oatmeal banana muffin on a wire cooling rack.

Oatmeal Banana Muffins

These oatmeal banana muffins combine bananas, oats and almond flour to create a delicious breakfast treat that’s perfectly moist and fluffy.

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Overhead view of 4 rows of yogurt muffins. Each row contains a different type of yogurt muffin: strawberry, blueberry, apple and chocolate chip.

Yogurt Muffins

Here’s how to make the best yogurt muffins with four different flavor variations. They’re protein-packed, kid-friendly, easy to make and perfect for meal prep.

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Three blueberry yogurt muffins stacked.

Blueberry Yogurt Muffins

These blueberry yogurt muffins are made with whole wheat flour, Greek yogurt, maple syrup and studded with fresh blueberries. They’re perfectly moist and fluffy and absolutely delicious.

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Two pumpkin muffins stacked on top of each other. They are balancing on top of a baking tin.

Healthy Pumpkin Muffins

These healthy pumpkin muffins are naturally sweetened and made with whole wheat pastry flour, rolled oats, yogurt and fall spices. They’re perfectly moist and fluffy and come together quickly.

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Two healthy pumpkin muffins stacked with a bite taken out of the top muffin.

Flourless Pumpkin Muffins

Healthy, paleo pumpkin muffins made with almond butter and pumpkin. No flour, no oil and no dairy. 9 grams of protein in each muffin!

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Two muffins stacked on top of each other.

Vegan Pumpkin Muffins

Full of pumpkin flavor and fall spice, these healthy vegan pumpkin muffins are naturally sweetened and made with simple pantry staple ingredients. They’re perfectly moist and fluffy!

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Plate with lemon poppyseed muffins topped with lemon zest and a glaze.

Lemon Poppyseed Muffins

These gluten-free lemon poppyseed muffins are made with almond and coconut flour and have a bright, lemony flavor. You can top the muffins with the lemon glaze for a real treat or leave it off.

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Blueberry muffin with a bite taken out of it on a cooling rack. A few whole blueberry muffins are around the bitten muffin.

High Protein Blueberry Muffins

These healthy blueberry muffins are packed with good for you ingredients! They’re  gluten-free, low in fat and sugar, high in protein and only 100 calories each!

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Apple muffins topped with cinnamon sugar on a cooling rack.

Healthy Apple Cinnamon Muffins

These healthy apple cinnamon muffins are made with a blend of whole wheat and all-purpose flour. They’re loaded with fall flavor and extra moist thanks to pumpkin!

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Double chocolate protein muffin with a bite taken out of it.

Double Chocolate Protein Muffins

These chocolate protein muffins are fudgy and oh so delicious. There’s no added sugar (sweetened only with bananas) and each muffin has 13 grams of protein!

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Plate of chocolate chip flourless zucchini muffins. One muffin is sliced in half and you can see the chocolate chips.

Flourless Zucchini Muffins

These flourless zucchini muffins are made with almond butter and sweetened with maple syrup. They’re grain-free, gluten-free and perfect for breakfast or snacking.

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Stack of three chocolate chip almond flour muffins.

Almond Flour Muffins

Healthy almond flour muffins made with date paste! These muffins are perfectly moist and naturally sweetened. 

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Strawberry chocolate chip protein muffins in red cupcake liners in a muffin tin. Muffins are topped with chopped strawberries and mini chocolate chips.

Strawberry Protein Muffins

These moist strawberry protein muffins are studded with fresh strawberries and chocolate chips. Made with oat flour and protein powder so they have an extra protein boost and they’re gluten-free! 

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Two healthy chocolate chip muffins stacked on top of each other. They are wrapped in a paper liner.

Healthy Chocolate Chip Muffins

These healthy chocolate chip muffins are soft, fluffy, perfectly moist and absolutely delicious. They’re made with whole wheat flour, Greek yogurt, maple syrup and studded with chocolate chips.

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Cluster of blueberry muffins on a gold cooling rack.

Vegan Blueberry Muffins

These vegan blueberry muffins are low-fat and oil free, but still perfectly moist, tender and really easy to make.

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Oat bran muffin made with shredded carrots and raisins sliced in half.

Oat Bran Muffins

These healthy oat bran muffins are made with a mix of oat bran cereal and whole wheat flour. They’re moist and delicious and perfect for a quick on-the-go breakfast.

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Pumpkin bran muffins stuffed with pumpkin seeds and raisins on a cooling rack.

Pumpkin Bran Muffins

Filled with fall flavor, these hearty pumpkin bran muffins are easy to whip up and provide a good source of fiber and protein. Only 160 calories per muffin!

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Nutrition information is automatically calculated, so should only be used as an approximation.





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